diff --git a/.gitignore b/.gitignore index e844d52..3779f49 100644 --- a/.gitignore +++ b/.gitignore @@ -105,5 +105,5 @@ dmypy.json .pyre/ # Exclude SPIE/Data en SPIE/Figures folders -scripts/SPIE/data -scripts/SPIE/figures +# scripts/SPIE/data +# scripts/SPIE/figures diff --git a/scripts/SPIE/data/ADC rotation/GD_obscured_PSF_xcentroid_expected_zern_psd_rot0.001.pkl b/scripts/SPIE/data/ADC rotation/GD_obscured_PSF_xcentroid_expected_zern_psd_rot0.001.pkl new file mode 100644 index 0000000..322c9d6 Binary files /dev/null and b/scripts/SPIE/data/ADC rotation/GD_obscured_PSF_xcentroid_expected_zern_psd_rot0.001.pkl differ diff --git a/scripts/SPIE/data/ADC rotation/GD_obscured_PSF_xcentroid_expected_zern_psd_rot0.125.pkl b/scripts/SPIE/data/ADC rotation/GD_obscured_PSF_xcentroid_expected_zern_psd_rot0.125.pkl new file mode 100644 index 0000000..7837525 Binary files /dev/null and b/scripts/SPIE/data/ADC rotation/GD_obscured_PSF_xcentroid_expected_zern_psd_rot0.125.pkl differ diff --git 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analysis/lowpass_frequency_filter_airy_locations.pkl copy new file mode 100644 index 0000000..53d6cf2 Binary files /dev/null and b/scripts/SPIE/data/WFE frequency analysis/lowpass_frequency_filter_airy_locations.pkl copy differ diff --git a/scripts/SPIE/data/file_descriptions.md b/scripts/SPIE/data/file_descriptions.md new file mode 100644 index 0000000..05f4761 --- /dev/null +++ b/scripts/SPIE/data/file_descriptions.md @@ -0,0 +1,202 @@ +# Data files descriptions + +Most of the files contained in this folder are intermediate results that I later used for plotting a figure or - in some cases - continuing an analysis. + +## `/ADC rotation` +Contains the "nominal" and "perturbed" geometric distortion points for various rotation angles of the ADC. + +**Filename structure** +Example: `GD_obscured_PSF_xcentroid_expected_zern_psd_rot0.001.pkl` + +Total 84 files. + +* `GD` = Geometric distortions +* `obscured_PSF` = Obscured pupil function used for the ELT pupil, which also means that an obscured Airy pattern was fitted to find the centroid location. +* `xcentroid_expected` = "Nominal" or unperturbed x-coordinates of the PSF on the image plane for the 11x11 grid of field points. +* `ycentroid_expected` = "Nominal" or unperturbed x-coordinates of the PSF on the image plane for the 11x11 grid of field points. +* `xcentroid_found` = Perturbed (with a WFE on the ADC prisms) x-coordinates of the PSF on the image plane for the 11x11 grid of field points. +* `ycentroid_found` = Perturbed (with a WFE on the ADC prisms) y-coordinates of the PSF on the image plane for the 11x11 grid of field points. +* `zern_psd` = Type of PSD that was applied for this particular simulation iteration. Here a combination of both a zerike polynomial component as well as a PSD component. +* `rotx.xx` = Rotation of x.xx degrees of the ADC prisms for this result. + + +## `/compressed items` +Contains various larger files with the used wavefront errors and an input field distribution which would speed things up during the analysis. + +* `ADC_input_field_1001x1001_1.49_onaxis_circular.pkl` = The nominal complex field distribution at the start of the ADC. Useful for quick iterative development of the code. Assumes a circular aperture. +* `ADC_input_field_1001x1001_1.49_onaxis_obscured.pkl` = The nominal complex field distribution at the start of the ADC. Useful for quick iterative development of the code. Assumes an obscured circular aperture. +* `ADC_input_field_1001x1001_1.49_onaxis.pkl` = The nominal complex field distribution at the start of the ADC. Useful for quick iterative development of the code. Assumes the segmented ELT pupil. + +**Wavefront error file structure** +Example: `ADC_tWFE_p1_psd_25nm.pkl` +* `ADC` Component for which the WFE is designed. +* `tWFE` Transmitted wavefront error. +* `px` The wavefront error is to be applied to prism x of the ADC. +* `psd_xxnm` Definition used for generating the WFE, with xx nm of RMS. Can also appear combined with lower order zernike modes as `zern_xxnm_psd_xxnm.pkl` + + +## `/GD Focal Plane WFEs` +Contains the "nominal" and "perturbed" geometric distortion points when a phase perturbation is added to the intermediate (ELT) focal plane. + +**Filename structure** +Example: `GD_IFP_zoom2_obscured_PSF_ycentroid_expected_zern_psd.pkl` + +Total 98 files, of which 96 GD coordinates. + +* `GD` = Geometric distortions +* `IFP` = Intermediate Focal Plane - The geometric distortions are still in the final MICADO image plane. +* `zoomx` = Denotes that only a part of the full MICADO field of view is analysed. See list below. +* `obscured_PSF` = Obscured pupil function used for the ELT pupil, which also means that an obscured Airy pattern was fitted to find the centroid location. +* `xcentroid_expected` = "Nominal" or unperturbed x-coordinates of the PSF on the image plane for the 11x11 grid of field points. +* `ycentroid_expected` = "Nominal" or unperturbed x-coordinates of the PSF on the image plane for the 11x11 grid of field points. +* `xcentroid_found` = Perturbed (with a WFE on the ADC prisms) x-coordinates of the PSF on the image plane for the 11x11 grid of field points. +* `ycentroid_found` = Perturbed (with a WFE on the ADC prisms) y-coordinates of the PSF on the image plane for the 11x11 grid of field points. +* `zern_psd` = Type of PSD that was applied for this particular simulation iteration. Here a combination of both a zerike polynomial component as well as a PSD component. Note: actually only PSD curves where used in this particular analysis. But the name was not changed. + +**Description of zoom parameter** +In the list below the normalised field coordinates correspond to -1:1, this is from -7.5e-3 to +7.5e-3 degrees or around 27 arcseconds. +'''python + # Defined by PSD + ## GD_IFP : -1:1 + ## GD_IFP_zoom : -1/11 :1/11 + ## GD_IFP_zoom2 : -.5/11:.5/11 + ## GD_IFP_zoom3 : -.1/11:.1/11 + ## GD_IFP_zoom7 : -.02/11:.02/11, surface interpolation + ## GD_IFP_zoom8 : -.05/11:.05/11, surface interpolation + ## GD_IFP_zoom9 : -.01/11:.01/11, surface interpolation + ## GD_IFP_zoom91 : -.01/11:.01/11 but hx and hy shifted to an area near the corner of the image, where distortion is supposed to be large + ## GD_IFP_zoom92 : -.01/11:.01/11, phase interpolation + ## GD_IFP_zoom93 : -.004/11:.004/11, phase interpolation + # (implemented)IDEA: Automate it, let it run all simulations for the lower left corner. Take multiples of 11 for the field points + # i.e. 1/11, 1/11**2, 1/11**3, 1/11**4 + # GD_IFP_zoom94 : - 1/11:1/11, phase interpolation, with shift to left bottom corner + # GD_IFP_zoom95 : - 1/11**2:1/11**2, phase interpolation, with shift to left bottom corner + # GD_IFP_zoom96 : - 1/11**3:1/11**3, phase interpolation, with shift to left bottom corner + # GD_IFP_zoom97 : - 1/11:1/11, phase interpolation, center of the field + # GD_IFP_zoom98 : - 1/11**2:1/11**2, phase interpolation, center of the field + # GD_IFP_zoom99 : - 1/11**3:1/11**3, phase interpolation, center of the field + # GD_IFP_zoom100 : - 1/11**4:1/11**4, phase interpolation, center of the field + # GD_IFP_zoom101 : - 1/11**4:1/11**4, phase interpolation, center of the field, with shift to left bottom corner + + # Defined by zernikes + ## GD_IFP_obscured_PSF_xcentroid_expected_zern : 50 nm rms 19 zernike modes : -1 : 1 + ## To do; check PSF shape at center field with zern wfe + ## To do; check interpolated WFE at any zoomed in field point. + ## GD_IFP_zoom4 : -.02/11:.02/11 (actually zernike WFE!), surface interpolation --> CONTINUOUS :D + ## GD_IFP_zoom5 : -.05/11:.05/11 (actually zernike WFE!), surface interpolation --> CONTINUOUS :D + ## GD_IFP_zoom6 : -.05/11:.05/11, surface interpolation, but hx and hy shifted to an area near the corner of the image (actually zern!) +''' + + +## `/GD full field` +Total 4 files + +A single set of geometric distortions vectors. Four files with the nominal x- and y-coordinates in mm and the perturbed (with WFEs) x- and y-coordinates. + +Wavefront errors with PSD description only. + +Note that for these results an obscured Airy pattern was assumed, as well as an obscured ELT aperture. + +## `/GD full field (Airy small offset)` +Total 4 files + +A single set of geometric distortions vectors. Four files with the nominal x- and y-coordinates in mm and the perturbed (with WFEs) x- and y-coordinates. A small offset to all field positions was applied, because for some reason there were issues when the source was exactly on-axis. + +Wavefront errors with PSD description only. + +Note that for these results a normal Airy pattern was assumed, as well as an unobscured ELT aperture. + +## `/GD full field (Airy zern psd)` +Total 4 files + +A single set of geometric distortions vectors. Four files with the nominal x- and y-coordinates in mm and the perturbed (with WFEs) x- and y-coordinates. A small offset to all field positions was applied, because for some reason there were issues when the source was exactly on-axis. + +Wavefront errors with Zernike polynomials (20 nm) and PSD (15 nm) description. + +Note that for these results a normal Airy pattern was assumed, as well as an unobscured ELT aperture. + +## `/GD full field (Airy)` +Total 4 files + +A single set of geometric distortions vectors. Four files with the nominal x- and y-coordinates in mm and the perturbed (with WFEs) x- and y-coordinates. + +Wavefront errors with PSD description only. + +Note that for these results a normal Airy pattern was assumed, as well as an unobscured ELT aperture. + + +## `/GD full field (Obscured Airy zern psd)` +Total 4 files + +A single set of geometric distortions vectors. Four files with the nominal x- and y-coordinates in mm and the perturbed (with WFEs) x- and y-coordinates. A small offset to all field positions was applied, because for some reason there were issues when the source was exactly on-axis. + +Wavefront errors with Zernike polynomials (20 nm) and PSD (15 nm) description. + +Note that for these results an obscured Airy pattern was assumed, as well as an obscured ELT aperture. + + +## `/GD zoomed field` +Total 4 files + +A single set of geometric distortions vectors. Four files with the nominal x- and y-coordinates in mm and the perturbed (with WFEs) x- and y-coordinates. The analysis was performed on a smaller subsection of the field. + +Wavefront errors with Zernike polynomials (20 nm) and PSD (15 nm) description (I think). + +Note that for these results an obscured Airy pattern was assumed, as well as an obscured ELT aperture. + +## `/GD zoomed field (Airy)` +Total 4 files + +A single set of geometric distortions vectors. Four files with the nominal x- and y-coordinates in mm and the perturbed (with WFEs) x- and y-coordinates. The analysis was performed on a smaller subsection of the field. + +Wavefront errors with Zernike polynomials (20 nm) and PSD (15 nm) description (I think). + +Note that for these results an Airy pattern was assumed, as well as an unobscured ELT aperture. + +## `/Strehl relation analysis` +Total 10 files + +All files related to the comparison of the Maréchal criterion to our simulation framework. + +* `SR_RMS_values.pkl` = Array containing the input RMS values of the scaled WFEs, ranging from 1 to 1000 nm. Results for a normal Airy pattern. +* `SR_strehl_zern.pkl` = Array containing Strehl values for the scaled WFEs, where the WFE was defined by a set of Zernike coefficients. Results for a normal Airy pattern. +* `SR_strehl_psd.pkl` = Array containing Strehl values for the scaled WFEs, where the WFE was defined by a PSD curve. Results for a normal Airy pattern. +* `SR_rms_zern_complete.pkl` = Array containing the RMS values of the scaled zernike WFEs, ranging from 1 to 1000 nm. Results for a normal Airy pattern. +* `SR_rms_psd_complete.pkl` = Array containing the RMS values of the scaled PSD WFEs, ranging from 1 to 1000 nm. + +* `SR_RMS_values_obscured.pkl` = Array containing the input RMS values of the scaled WFEs, ranging from 1 to 1000 nm. Results for an obscured Airy pattern. +* `SR_strehl_zern_obscured.pkl` = Array containing Strehl values for the scaled WFEs, where the WFE was defined by a set of Zernike coefficients. Results for an obscured Airy pattern. +* `SR_strehl_psd_obscured.pkl` = Array containing Strehl values for the scaled WFEs, where the WFE was defined by a PSD curve. Results for an obscured Airy pattern. +* `SR_rms_zern_complete_obscured.pkl` = Array containing the RMS values of the scaled zernike WFEs, ranging from 1 to 1000 nm. Results for an obscured Airy pattern. +* `SR_rms_psd_complete_obscured.pkl` = Array containing the RMS values of the scaled PSD WFEs, ranging from 1 to 1000 nm. + +## `/WFE frequency analysis` +Files containing the results of the WFE frequency analysis, where different low- high- or bandpass filters where applied to a given WFE. Then the centroid shift was analysed. + +Total 11 files + +* `centroid_shift_zernikes.pkl` + Tuple containing the centroid shift at different + wavefront RMS values, for which the WFE was + defined by Zernike modes. Contains, in order: + - RMS values + - Centroid shift radius + - Error in centroid shift radius + - Strehl values for the respective WFEs + +* `centroid_shift_psd.pkl` + Tuple containing the centroid shift at different + wavefront RMS values, for which the WFE was + defined by a PSD curve. 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