Added descriptions to all scripts, checked functioning

scripts/verify_strehl.py

@@ -1,14 +1,19 @@
 #!/usr/bin/env Python3
 import numpy as np
-from pdb import set_trace
 import json
 import matplotlib.pyplot as plt
 from matplotlib.ticker import FormatStrFormatter
 from matplotlib.colors import LogNorm
 import sys
-sys.path.insert(0, '/Users/joost/Dropbox/Werk/PhD/Analyses/Python/Analytical/Fourier Optics')
+sys.path.insert(0, '/Users/joost/Dropbox/Werk/PhD/Documents/Published/FourierOptics GitHub release/')
 from fourierOptics import *
 
+'''
+	Description: Script that compares the Maréchal criterion to the Strehl of the PSF experiencing 
+				 a WFE with some RMS in the pupil. This script would form  the basis for one of the
+				 SPIE 2020 results.
+'''
+
 def saveVariableToTXT(variable, filename):
 	variableFile = open(filename, 'w')
 
@@ -110,7 +115,6 @@ if __name__ == '__main__':
 			Exyz_zern,xp,yp = fou.fresnel_propagation(U_in, x, y, dz=M1.f, show=False, outputCoordinates=oC)
 			Strehl_zern = np.abs(psf.get_coupling(Exyz_og, Exyz_zern))**2
 			
-			set_trace()
 			StrehlList_zern.append(Strehl_zern)
 
 			####################################