Added descriptions to all scripts, checked functioning

scripts/MICADO_paraxial_system_dispersion.py

@@ -1,14 +1,22 @@
 #!/usr/bin/env Python3
 import numpy as np
-from pdb import set_trace
 import matplotlib.pyplot as plt
 from matplotlib.ticker import FormatStrFormatter
 from matplotlib.colors import LogNorm
 import time
-import sys
-sys.path.insert(0, '/Users/joost/Dropbox/Werk/PhD/Analyses/Python/Analytical/Fourier Optics')
-from fourierOptics import *
 from scipy import interpolate
+import sys
+sys.path.insert(0, '/Users/joost/Dropbox/Werk/PhD/Documents/Published/FourierOptics GitHub release/')
+from fourierOptics import *
+
+'''
+	Description:
+	This early script simulates a dispersed PSF. By rotating the 
+	ADC prisms we can inspect the change in the dispersion. 
+	The theoretical best position of the ADC did not result in 
+	an undispersed PSF, for some reason.
+'''
+
 
 def perform_padding(A, xs, ys):
 	assert A.shape[0] <= xs and A.shape[1] <= ys, 'New size is smaller than array size.'
@@ -101,10 +109,11 @@ if __name__ == '__main__':
 
 		ELT_ADC 	= ADCObject()
 
-		# optAngle = ELT_ADC.find_optimum_angle(17.9, lList[0], lList[-1])
-		# print(optAngle)
+		optAngle = ELT_ADC.find_optimum_angle(17.9, lList[0], lList[-1])
+		print(optAngle)
 		print('ADC angle now set to {:.4f}'.format(ELT_ADC.theta))
 		# ELT_ADC.set_orientation(180)
+		ELT_ADC.set_orientation(-optAngle+90)
 
 		ELT_CAM		= ParaxialLens(CA=89.2, f=4278.32701, name='MCD-CAM')
 
@@ -147,8 +156,8 @@ if __name__ == '__main__':
 		wf *= ELT_MIRROR.phase_delay(x,y,l, paraxial=True)
 		Exyz, x, y = fou.fresnel_propagation(wf, xin, yin, dz=ELT_MIRROR.f, oversample=None, 
 			show=False, save=False)#, outputCoordinates=coordinatesList[0], apply_interpolation=False)
-		save_variable('./data/ELT_FP_{}.pkl'.format(l*1000), [Exyz, x, y])
-		set_trace()
+		# save_variable('./data/ELT_FP_{}.pkl'.format(l*1000), [Exyz, x, y])
+
 		# From ELT-FP to MCD-COL
 		print('Propagating from ELT-IFP to MCD-COL', end='\r')
 		Exyz2, x2, y2 = fou.fresnel_propagation(Exyz, x, y, dz=ELT_COL.f, oversample=None, 
@@ -245,9 +254,6 @@ if __name__ == '__main__':
 	# plt.savefig(save, bbox_inches='tight', transparent=True)
 	plt.show()
 
-	set_trace()
-
-