Added descriptions to all scripts, checked functioning

demonstration scripts/thesis_propagation_figures.py

@@ -1,10 +1,16 @@
 import numpy as np
 import sys
-# sys.path.insert(0, '/Users/joost/Dropbox/Werk/PhD/Analyses/Python/Analytical/Fourier Optics')
 sys.path.insert(0, '/Users/joost/Dropbox/Werk/PhD/Documents/Published/FourierOptics GitHub release/')
 from fourierOptics import *
 import matplotlib.pyplot as plt
-from pdb import set_trace
+
+'''
+	Description:
+	This script generates the amplitude and phase information of all surfaces
+	in the MICADO paraxial model in a nicely presented form.
+'''
+
+
 
 if __name__ == '__main__':
 	plt.rc('font', family='serif')
@@ -13,13 +19,9 @@ if __name__ == '__main__':
 	# Initiate MICADO paraxial model
 	mcd = ParaxialMICADO(n=3001, m=3001, dpix=50)
 
-	# Generate the PSF and plot it
-	# E, x, y = mcd.propagate(l=1.35e-3,surface=-1, zoom=True, show=True, save='all')
-
 	confList = [ ( 1, [-0.4, 0.4, -0.4, 0.4], 	'02_fourier_ELT-IFP.pdf'),
 				 ( 2, [-50, 50, -50, 50], 		'03_fourier_ELT-COL.pdf'),
 				 ( 4, [-50, 50, -50, 50], 		'04_fourier_ELT-MCD-ADC-P2.pdf'),
-				 # (-1, [-1.2, 1.2, -1.2, 1.2], 	'05_fourier_ELT-MCD-DET.pdf')]
 				 (-1, [-1.2/2.669, 1.2/2.669, -1.2/2.669, 1.2/2.669], 	'05_fourier_ELT-MCD-DET.pdf')]
 
 
@@ -50,4 +52,4 @@ if __name__ == '__main__':
 	_fig.colorbar(_im2, ax=_ax2, label='Phase')
 	plt.tight_layout()
 	# plt.savefig('01_fourier_ELT-M1.pdf', bbox_inches='tight', transparent=True)
-	plt.close()#show()
+	plt.show()